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Publications

Below is a list of our key publications. To see all publications affiliated to our group, click here.

* Equal contribution, # Corresponding author

Metabolic profiling of patient-derived organoids reveals nucleotide synthesis as a metabolic vulnerability in malignant rhabdoid tumors

Kes, M.M.G., Morales-Rodriguez, F., Zaal, E.A., de Souza, T., Proost, N., van de Ven, M., van den Heuvel-Eibrink, M.M., Jansen, J.W.A., Berkers, C.A., Drost, J.# 

Cell Rep Med. 2025 Jan 21;6(1):101878

SMARCB1 loss activates patient-specific distal oncogenic enhancers in malignant rhabdoid tumors

Liu, N.Q.*, Paassen, I.*, Custers, L*., Zeller, P., Teunissen, H., Ayyildiz, D., He, J., Buhl, J.L., Hoving, E.W., van Oudenaarden, A., de Wit, E.#, Drost, J.#

Nat Commun. 2023 Dec 1;14(1):7762.

Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma

DeMartino, J.*, Meister, M.T.*, Visser, L.L.*, Brok, M., Groot Koerkamp, M.J.A., Wezenaar, A.K.L., Hiemcke-Jiwa, L.S., de Souza, T., Merks, J.H.M., Rios, A.C., Holstege, F.C.P., Margaritis, T.#, Drost, J.#

Nat Commun. 2023 May 27;14(1):3074

Mesenchymal tumor organoid models recapitulate rhabdomyosarcoma subtypes.

Meister, M.T., Groot Koerkamp, M.J.A., de Souza, T., Breunis, W.B., Frazer-Mendelewska, E., Brok, M., DeMartino, J., Manders, F., Calandrini, C., Kerstens, H.H.D., Janse, A., Dolman, M.E.M., Eising, S., Langenberg, K.P.S., van Tuil, M., Knops, R.R.G., van Scheltinga, S.T., Hiemcke-Jiwa, L.S., Flucke, U., Merks, J.H.M., van Noesel, M.M., Tops, B.B.J., Hehir-Kwa, J.Y., Kemmeren, P., Molenaar, J.J., van de Wetering, M., van Boxtel, R., Drost, J.#, Holstege, F.C.P#.

EMBO Molecular Medicine 2022 Aug 2; e16001

Normal and tumor-derived organoids as a drug screening platform for tumor-specific drug vulnerabilities

Calandrini, C., Drost, J.#

STAR Protocols 2022; Jan 10;3(1):101079

Organoid-based drug screening reveals neddylation as therapeutic target for malignant rhabdoid tumors.

Calandrini, C., van Hooff, S.R., Paassen, I., Ayyildiz, D., Derakhshan, S., Dolman, M.E.M., Langenberg, K.P.S., van de Ven, M., de Heus, C., Liv, N., Kool, M., de Krijger, R.R., Tytgat, G.A.M., van den Heuvel-Eibrink, M.M., Molenaar, J.J., Drost, J.#

Cell Reports 2021 Aug 24; 36(8):109568.

Single cell derived mRNA signals across human kidney tumors.

Young, M.D.*, Mitchell, T.J.*, Custers, L.*, Margaritis, T., Morales-Rodriguez, F., Kwakwa, K., Khabirova, E., Kildisiute, G., Oliver, T.R.W., de Krijger, R.R., van den Heuvel-Eibrink, M.M., Comitani, F., Piapi, A., Bugallo-Blanco, E., Thevanesan, C., Burke, C., Prigmore, E., Ambridge, K., Roberts, K., Vieira Braga, F.A., Coorens, T.H.H., Del Valle, I., Wilbrey-Clark, A., Mamanova, L., Stewart, G.D., Gnanapragasam, V.J., Rampling, D., Sebire, N., Coleman, N., Hook, L., Warren, A., Haniffa, M., Kool, M., Pfister, S.M., Achermann, J.C., He, X., Barker, R.A., Shlien, A., Bayraktar, O.A, Teichmann, S., Holstege, F.C., Meyer, K.B., Drost, J.#, Straathof, K.#, Behjati, S.#

Nature Communications 2021 Jun 23; 12(1):3896.

Somatic mutations and single-cell transcriptomes reveal the root of malignant rhabdoid tumours.

Custers, L.*, Khabirova, E.*, Coorens, T.H.H.*, Oliver, T.R.W., Calandrini, C., Young, M.D., Vieira Braga, F.A., Ellis, P., Mamanova, L., Segers, H., Maat, A., Kool, M., Hoving, E.W., van den Heuvel-Eibrink, M.M., Nicholson, J., Straathof, K., Hook, L., de Krijger, R.R., Trayers, C., Allinson, K., Behjati, S.#, Drost, J.#. 

Nature Communications 2021 Mar 3; 12(1):1407.

Organoid models of childhood kidney tumours.

Ooms, A.H.A.G.*, Calandrini, C.*, de Krijger, R.R., Drost, J.#.

Nature Reviews Urology 2020 Jun; 17(6):311-313.

An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity.

Calandrini, C.*, Schutgens, F.*, Oka, R., Margaritis, T., Candelli, T., Mathijsen, L., Ammerlaan, C., van Ineveld, R.L., Derakhshan, S., de Haan, S., Dolman, E., Lijnzaad, P., Custers, L., Begthel, H., Kerstens, H.H.D., Rookmaker, M., Verhaar, M., Tytgat, G.A.M., Kemmeren, P., de Krijger, R.R., Al-Saadi, R., Pritchard-Jones, K., Kool, M., Rios, A., van den Heuvel-Eibrink, M.M., Molenaar, J., van Boxtel, R., Holstege, F.C.P., Clevers, H., Drost, J.#.

Nature Communications 2020;11(1):1310.

Organoids in cancer research.

Drost, J.#, Clevers, H.

Nature Reviews Cancer 2018 Jul, 18(7): 407-418.

Use of CRISPR-modified human stem cell organoids to study the origin of mutational signatures in cancer.

Drost, J.*, van Boxtel, R.*, Blokzijl, F., Mizutani, T., Sasaki, N., Sasselli, V., de Ligt, J., Behjati, S., Grolleman, J.E., van Wezel, T., Nik-Zainal, S., Kuiper, R.P., Cuppen, E., Clevers, H.

Science 2017 Oct 13, 358 (6360): 234 – 238.

Sequential cancer mutations in cultured human intestinal stem cells.

Drost, J., van Jaarsveld, R.H., Ponsioen, B., Zimberlin, C., van Boxtel, R., Buijs, A., Sachs, N., Overmeer, R.M., Offerhaus, G.J., Begthel, H. Korving, J., van de Wetering, M., Schwank, G. Logtenberg, M., Cuppen, E., Snippert, H.J., Medema, J.P., Kops, G. J. P. L., Clevers, H.

Nature 2015 May 7, 521 (7550), 43 – 47.

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